BRC Complete Resource List
COMPUTERS  | IMAGING  | ELECTROPHYSIOLOGY | CELL & TISSUE CULTURE | MOLECULAR BIOLOGY

ELECTRODE MANUFACTURINGCOMPUTER OFFICE & SUPPORT | MBL CENTRAL MICROSCOPY FACILITY

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COMPUTERS

The BRC laboratories with approximately 40 supported PCs are connected via a local area network. Computers on the network connect via 10-drop lines to the internet through the MBL server. The MBL Information Technology department currently houses the CIDIS, Pharmabase and www.biocurrents.org for BioCurrents as well as in excess of 100 Enterprise servers that are the infrastructure /foundation for the entire Enterprise of the MBL. The IT department has an expert staff that supports the educational program, administrative systems and research services. IT is the main support for the Informatics program (uBio) in taxonomy that has established global inroads for delivery of services. The network at MBL is robust with a gigabyte connection to the Internet and is a member of the Internet 2 community through our partners at the Woods Hole Oceanographic Institution.

IMAGING

Company Item QTY Company Item QTY
Melles Griot 43 Series Ion Laser 1 - TL960A
LSI UV Pulse Laser 1 Sony DVD Recorder RDR-GX300 1
Burle CCD Camera 2 Sony Color Video Printer 1
ProVideo TV Monitor 2 Zeiss Stemi SV8 1
Mitsubishi Video Copy Processor 3 Schott Light Source 4
Setchell Carlsom 10M915 Monitor 1 EXFOS X-Cite UV Light Source 1
Hamamatsu ICCD Camera System 1 Zeiss Axiovert 25 2
Yutek TV Monitor 2 Zeiss Stemi 2000-CS 1
Andor EMCCD Camera 1 Zeiss Stemi 2000-C 1
Toshiba TV Monitor 2 Zeiss Stemi 2000 4
Watec CCD Camera 3 Dolan-Jenner Light Source 2
Sony TV Monitor 2 Zeiss AttoArc HBO 10 2
Sony Color CDD Camera 1 Applied Scientific Eco-Lite 150 Light Source 1
Zeiss ZVS-47E CCD Camera System 1 Zeiss IM35 Inverted Microscope 2
MTI MTI CCD72 Camera System 1 Zeiss AttoArc HBO 50 2
JVC Time Lapse VCR 1 Leica Galen III Microscope 1
Dalsa CCD Camera 1 Wild Stereoscope 1
Hamamatsu C2400 CCD w/ Argus Image Processor 1 EXFOS UV Light Source 1
Phillips Time Lapse VCR 1 Zeiss Stereoscope 1
Dolan-Jenner MI-150 Light Source 2 Zeiss Axiovert 100TV 1
Zeiss Axiovert 40CFL 1 Zeiss Axiovert 10 1
Zeiss Axioskop Upright Microscope 1 Confocal
Zeiss Axiostart Plus 1 BRC Shutter Control System 1
Zeiss KL-1500 LCD Light Source 1 EXFOS OmniCure 1000 UV Light 1
EXFOS X-Cite 120 Fluorescence Light Source 1 Zeiss Axiovert 200 1
Perkin Elmer UltraView RS Spinning Disc 1 Zeiss Axiovert 135TV 1
Zeiss SMC4 Stereoscope 1
Leica Light Source 1
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ELECTROPHYSIOLOGY
Company Item QTY Company Item QTY
BRC IonView32 System 9 TMC Vibration Isolation Table 11
BRC Insulated Faraday Cage 8 BASi Rotating Disc Electrode RDE-2 1
BRC Faraday Cage 2 Warner Instruments Oocyte Clamp OC-725C 2
Axon Instruments DigiData 1322A 8 Warner Instruments Intracellular Electrometer IE-210 2
Axon Instruments DigiData 1200 1 CHI 660B Electrochemical Analyzer 1
Axon Instruments Axoclamp 2B 3 CHI 832A Electrochemical Analyzer 1
Axon Instruments Axoclamp 2A 1 YSI 3200 Conductivity Instrument 1
Axon Instruments Axopatch 200B 3 AMPI Master 8 Digital Pulse Generator 1
Axon Instruments Axopatch 200A 1 Harvard 6012 Stimulator 1
Axon Instruments CyberAmp 320 3 Medical Systems Digital Stimulator 1
Axon Instruments MiniDigi 4
Medical Systems Bipolar Temperature Controler TC202A 1
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CELL & TISSUE CULTURE
Company Item QTY Company Item QTY
Napco 5400 CO2 Waterjacket Incubator 1 Lab Line CO2 Incubator 1
Fisher Scientific CO2 Waterjacket Incubator 1 Edge Guard Culture Hood 2
Fisher Scientific Low Temperature Incubator 1 Precision Instruments Low Temperature Incubator 815 1
Fisher Scientific Isotemp Manual Defrost Refrigerator/Freezer 1 Camden Instruments Vibroslice Motorized Tissue Cutter MA-752 1
Revco -20°C Manual Defrost Freezer 1 Camden Instruments 7600 Bath Cooler 1
Fisher Scientific 630D Incubator 1 Neslab RTE-7 Waterbath 1
Neslab RTE-211 Waterbath 1 Fisher Scientific Isotemp 105 Waterbath 1
Precision Scientific 180 Series Waterbath 1
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MOLECULAR BIOLOGY
Company Item QTY Company Item QTY
NanoDrop ND-1000 Spectrophotometer 1 BioRad PowerPac Basic 1
UVP BioDoc-It Gel Imaging System 1 BRC Luminometer 1
BioRad Opticon Real Time PCR Engine 2 BioRad PDS-1000/He Biolistic Particle Delivery System 1
Horiba Jobin Yvon FlouroMax-3 1 BioRad Trans Blot SD 1
Horiba Jobin Yvon MicroMax 384 Plate reader 1 Thermo EC135-90 Constant Power Source 1
Gilson FC-203B Fraction Collector 1 MJ Research PTC-200 Peltier Thermocycler 1
Tecan Sunrise Plate Reader 1
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ELECTRODE MANUFACTURING
Company Item QTY Company Item QTY
Sutter P-97 Micropipette Puller 2 Narishige EG-44 micro grinder 2
DKI Vertical Pipette Puller 1 Narishige MF-830 Microforge 1
Sutter P-2000 Laser Puller 1 Narishige MF-900 Microforge 1
EZ OS-5020G Oscilloscope/
Function Generator
1 Yamato DX-300 Drying Oven 1
Kinetic Spot Cure-H UV Gun 1 Electro-Light Corporation ELC-500 Light Exposure System 1
Precision Scientific Econotherm Lab Oven 1 Fisher Scientific Isotemp 281A Vacuum Oven 1
Baxter Temp Con Oven 1
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COMPUTERS, OFFICE & SUPPORT
Company Item QTY Company Item QTY
GE Space Maker II Microwave 1 BRC Computer 1
Kenmore Mini Fridge Freezer 1 Lenovo Laptop 1
Epson LCD Projector 1 Fisher Scientific Isotemp Laboratory Oven 1
Benq DLP Projector 1 Fisher Scientific Isotemp Manual Defrost Refrigerator/Freezer 3
Sharp 42” LCD TV 1 Fisher Scientific Isotemp Laboratory Refrigerator 1
Kodak Carousel Slide Projector 2 Glas-Col Rugged Rotator 099A RD4512 1
HP Color LaserJet 3500 1 Fisher Scientific Isotemp 2050FS 1
HP LaserJet 4100N 1 Eppendorf 5417C Centrifuge 1
HP LaserJet 1200 2 Hitachi VC-6015 Oscilloscope 1
HP Photosmart 8150 1 Omega CSC32 3
HP ScanJet 4070 1 EG&G 5204 Lock-in Analyzer 1
HP Computer 26 Instek GFG-8216A Function Generator 1
Dell Computer 4 Tektronix TDS-1002 Oscilloscope 1
Systemax Computer 7 Instek LCR Meter 1
Temperature Controler 1 Narishige IM-300 Injector 2
Tenma 72-465 Multifunction Counter 4 Tenma Spectral Analyzer 1
BRC Temperature Control System 4 EG&G 5113 Pre-Amp 2
Tektronix TDS-210 Digital Oscilloscope 4 Bosch ½” Drill Press 1
Narishige MHW-3 Hydrolic Manipulator 4 Bosch Cordless Drill 1
Signal Recovery 5113 Pre-Amp 1 Tektronix TDS-2014B 1
Braintree Scientific Syringe Pump 1 Tektronix TDS-3024 1
Tektronix 5111A Oscilloscope 1 Beckman Coultier Microfuge 22R Centrifuge 1
Tektronix TDS-340A Oscilloscope 1 Fisher Scientific Safety-Flow Fume Hood 1
Dynamax Peristaltic Pump RP-1 1 ALA Scientific BPS-4 Valve Control 1
Ismatec Cassette Pump 1 Leader LFG-1300S Function generator 1
Millipore Direct-Q Water Distillation System 1 Damon/IEC Division Centrifuge 1
Bosch Dishwasher 1 P.A.R. Lock-in Amplifier 122 1
Sharp Carousel II Microwave 1 Univentor Syringe Pump 1
Lab Line Orbital Shaker 1 Tektronix AFG-3021 Arbitrary Function Generator 1
Houston Instruments Chart Recorder 1 BK 4003A Function Generator 2
Denver Instruments UB-10 pH Meter 1 BRC Piezoelectric Driver 2
Wescor Vapor Pressure Osmometer 5520 1 Data Precision 8100 Voltage Standard 1
Ohaus Digital Analytical Scale GT400 1 Nicolet 3091 Digital Oscilloscope 1
Mettler Toledo AX504 Digital Analytical Scale 1 Drummond Nanoject II 1
Diatome 45° Diamond Knife 1 Warner Instruments SF-77B Perfusion Fast-Step System 2
Eppendorf 5415C Centrifuge 1 Tenma Function Generator 1
Blue M Laboratory Oven 1 Buchler Polystatic Pump 1
Branson 1510 Ultrasonicator 1 New Era Pump Systems Syringe Pump NE-1800 1
Eppendorf Patchman NP2 Manipulator 1 EG&G 7260 DSP Lockin Amplifier 2
Medical Systems PLI-100 Injector 1 Thermo -80°C Freezer 1
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MBL CENTRAL MICROSCOPY FACILITY

The Central Microscopy Facility supply year round and summer investigators as well as courses with instrumentation, some owned by MBL and some on loan, so please read through this guide to familiarize yourself with the Facility. Feel free to contact the Facility for more information. Some of the CMF rooms are on the MBL One Card access system. You will need to get CMF authorization for your card to work on those CMF doors.

TEM Zeiss 10CA 20-100KV TEM equipped with:
• reduced magnification (increased contrast) cartridge(+/- 40 degrees tilt and 360 degree rotation)
• port with video camera, monitor, recording interface
• standard specimen cartridge and goniometer specimen cartridge
• 3 1/4 X 4 inch sheet film camera
• AMT digital 1MP side mount camera
*The charge is $30 per hour with a $0.60 per negative charge.
*The stand-up darkroom for the microscope is equipped with a temperature maintained nitrogen burst film developer system and processing chemicals.

SEM JEOL JSM-840 1- 35KV SEM equipped with:
• goniometer specimen stage (X, Y,Z, and tilt translation; and continuous rotation)
• LaB6 electron source, liquid nitrogen pump baffle and anti contamination device
• PC based Orion digital image capture system
• Polaroid 4 X 5 camera and 60mm camera, video monitor and recording interface
• Oxford cryo stage, preparation chamber, and transfer device
• Tracor Northern elemental dispersive spectrophotometer (EDS)
• HKL electron backscatter diffraction (EBSD) detector
*The charge is $30 per hour for standard SEM and an additional $20 per hour for cryoSEM and EDS. Cost per hour does not include film but it does include processing chemicals in the attached darkroom.

LIGHT OPTICS LABORATORIES; including confocal and image analysis
Microscopic and photomicrographic equipment is available year round much of it through the courtesy of Carl Zeiss, Inc. The latest in optical microscopy equipment for such techniques as phase, dark-field, fluorescence, polarization, reflected light, and DIC are available.

Included are the Zeiss AxioImager Z1, Axioscope and Discovery stereo units with accessories for high-resolution color or black and white as well as low-light digital imaging and enhancement.Cameras available are the Zeiss MRm Axiocam, HRC Axiocam and HRm Axiocam. A camera lucida is also available for the compound Axioscope microscope. The AxioImager Z1 has Zeiss Vision and UIC MetaMorph imaging software. The Discovery dissecting microscope has the Zeiss Vision and UIC MetaMorph.

Zeiss ApoTome
The ApoTome is an innovative structured illumination slider installed on the AxioImager Z1 microscope. Provides improved image quality and enhanced contrast in conventional fluorescence microscopy. Deblurred 2D planes, even with thick specimens. Utilizes a high-end technique for artifact-free structured illumination. Flexible technique used for the entire spectrum of potential fluorochromes with the appropriate filter cubes. Standard light microscopy and image analysis is charged at $10.00 per hour.

CONFOCAL MICROSCOPY SYSTEMS

Zeiss LSM-510 NLO META - Inverted
The MBL has a Zeiss LSM-510 NLO with META detector laser scanning confocal system. The Zeiss 510 LSM has three independent simultaneous confocal channels for reflection and fluorescence and an extra channel for transmitted light. System is capable of standard and 2 photon excitation using the Coherent Chameleon laser. This highly automated system creates 8 or 12-bit 2048x2048 digital images using a Pentium PC based user interface. The Zeiss 510 LSM is configured on an inverted Axiovert 200 M microscope with a variety of objectives available and a complete incubator chamber system.

Zeiss LSM-510 NLO META - upright
The MBL has a LSM-510 NLO with META detector laser scanning confocal system configured on a fixed stage Axioskop 2FS microscope with a variety of objectives and a Sutter stage and manipulators. The Zeiss 510 LSM has three independent simultaneous confocal channels for reflection and fluorescence and an extra channel for transmitted light. System is capable of standard and 2 photon excitation using the Chameleon XR laser provided by Coherent. This highly automated system creates 8 or 12-bit 2048x2048 digital images using a Pentium PC based user interface.

Seasonal:

Zeiss LSM 710 Zeiss has provided the LSM 710 laser scanning confocal system capable of triple label fluorescence and high resolution DIC. The 710 has two independent confocal channels for reflection and fluorescence and an extra channel for transmitted light.  Laser lines are 405, 458, 488, 514 and 543 nm. This highly automated system creates 8 or 12-bit digital images with up to 2048x2048 pixels using a Pentium PC based user interface. The Zeiss PASCAL is configured on an upright Axioplan microscope with a variety of objectives available. The system has image processing, colocalization analysis, quantitative measuring software and 3D rendering.

Zeiss LSM DuoScan
Nikon C1si
Nikon A1R
Olympus 1000
* The confocal microscope use is charged at $28.00 per hour, consumables are extra.

ELECTRONIC IMAGING FACILITIES

Universal Imaging Corporation MetaMorph processing and analysis systems are available and capable of interfacing with the CMF's light and electron microscopes.

The AxioImager Z1 has Zeiss Vision and UIC MetaMorph imaging software. The Discovery dissecting microscope has the UIC MetaMorph, Zeiss Axiovision and SPOT software.

LC-PolScope
The CRI LC-PolScope unit can be mounted on the Axioplan. It is a quantitative imaging system that measures and displays the birefringent structure in transparent objects with computer controlled polarized LM techniques.

Copy stand with digital camera as well as stand alone image processing stations
• PC software: Zeiss LSM confocal, UIC MetaMorph, Zeiss Vision, HKL EBSD
• MAC software: NIH Image, PhotoShop; flatbed scanner
• Printers are available through the Digital Processing Center in the Library.
*Image analysis and computer use is charged at $5.00 per hour, photographic consumables are extra.

PREPARATIVE MICROSCOPY TECHNIQUE SERVICE
The Facility offers a full range of expert support including fixation, embedding, sectioning, staining and scope time.The cost for this service, excluding scope time, is $28 per hour. Inquiries should be made regarding special technique requirements.

HISTOLOGY SERVICES
We are in the process of setting up a histology processing line.Please contact the CMF staff to discuss use.

PRINTING DARKROOM equipped with:
• Two Durst S-45 enlargers, one equipped with a point light source and the other a diffuse light source
• all condenser lenses, negative carriers, enlarging lenses capable of negative formats between 35mm and 4 X 5 inch
• easel, focusing aid, and contrast filters, wet table and developer trays, RC and non-RC paper dryers
* Facility supplies Dektol developer, rapid fixer, and stop bath: users must supply any other preferred chemicals. Users are charged $5 per hour.

PREPARATIVE AND ANCILLARY EQUIPMENT

• Two Denton Vacuum evaporators equipped to:
~ glow discharge
~ stationary and tilting omni rotary evaporative coating and shadowing using carbon and metals
•Oxygen plasma etcher
• Chemical fume hood, refrigerator, pH meter, osmometer, prep areas
~Stereo viewer capable of parallax heightening, curing oven
• Tousimis Samdri-780A critical point dryer with various specimen carriers (Liquid CO2 provided)
• Tousimis Samsputter-2A sputter coater (gold/palladium)
• Reichert knife breaker and glass breaking pliers, dissecting microscope for block trimming, knife inspection, and specimen viewing, compound microscope, hot plates, and stains for viewing thick sections

• The microtomes are located in a separate sectioning room and include:
~ Ultramicrotomes: Sorvall MT-2, MT-2B, Reichert Ultracut E, and Leica EM Trim
~Leica vibratome, Spencer sliding microtome, Sorvall JB-4 microtome and an AO 820 microtome
~ Microm Cryostat

* There is a $5 per hour charge for microtome use which is waved when using the CMF microscopes.
*The CMF maintains a supply of Liquid Nitrogen for purchase by the liter.

MBL CENTRAL MICROSCOPY FACILITY CONTACT
Louis Kerr
Marine Biological Laboratory, Woods Hole, Ma, 02543
Phone: (508) 289-7273
Email: lkerr@mbl.edu or Blair Rossetti at ext. 7297


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